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1

A Pan-cancer Transcriptome Analysis Reveals Pervasive Regulation through Alternative Promoters

Demircioğlu, Deniz, Cukuroglu, Engin, Kindermans, Martin, Nandi, Tannistha, Calabrese, Claudia, Fonseca, Nuno A., Kahles, André, Lehmann, Kjong-Van, Stegle, Oliver, Brazma, Alvis, Brooks, Angela N., R

Journal:

Year:

2019

Language:

english

File:

PDF, 5.43 MB

english, 2019

2

Hot spots in protein–protein interfaces: Towards drug discovery

Cukuroglu, Engin, Engin, H. Billur, Gursoy, Attila, Keskin, Ozlem

Journal:

Progress in Biophysics and Molecular Biology

Year:

2014

Language:

english

File:

PDF, 1.95 MB

english, 2014

3

Analysis of Hot Region Organization in Hub Proteins

Engin Cukuroglu, Attila Gursoy, Ozlem Keskin

Journal:

Annals of Biomedical Engineering

Year:

2010

Language:

english

File:

PDF, 814 KB

english, 2010

4

[IEEE 2010 5th International Symposium on Health Informatics and Bioinformatics - Ankara, Turkey (2010.04.20-2010.04.22)] 2010 5th International Symposium on Health Informatics and Bioinformatics - Structural properties of hub proteins

Cukuroglu, Engin, Ozkirimli, Elif, Keskin, Ozlem

Year:

2010

Language:

english

File:

PDF, 187 KB

english, 2010

5

HotRegion: a database of predicted hot spot clusters

Cukuroglu, E., Gursoy, A., Keskin, O.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.50 MB

english, 2012

6

PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes

Baspinar, A., Cukuroglu, E., Nussinov, R., Keskin, O., Gursoy, A.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.78 MB

english, 2014

7

Molecular Features Underlying Neurodegeneration Identified through In Vitro Modeling of Genetically Diverse Parkinson’s Disease Patients

Lin, Lin, Göke, Jonathan, Cukuroglu, Engin, Dranias, Mark R., VanDongen, Antonius M.J., Stanton, Lawrence W.

Journal:

Year:

2016

Language:

english

File:

PDF, 7.62 MB

english, 2016

8

Histone modifications and p53 binding poise the p21 promoter for activation in human embryonic stem cells

Itahana, Yoko, Zhang, Jinqiu, Göke, Jonathan, Vardy, Leah A., Han, Rachel, Iwamoto, Kozue, Cukuroglu, Engin, Robson, Paul, Pouladi, Mahmoud A., Colman, Alan, Itahana, Koji

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.88 MB

english, 2016

9

Disrupting Interactions Between β-Catenin and Activating TCFs Reconstitutes Ground State pluripotency In Mouse Embryonic Stem Cells

Saj, Abil, Chatterjee, Sujash S., Zhu, Bowen, Cukuroglu, Engin, Gocha, Tenzin, Zhang, Xiaoqian, Göke, Jonathan, DasGupta, Ramanuj

Journal:

Year:

2017

Language:

english

File:

PDF, 3.88 MB

english, 2017

10

Enriching Traditional Protein-protein Interaction Networks with Alternative Conformations of Proteins

Halakou, Farideh, Kilic, Emel Sen, Cukuroglu, Engin, Keskin, Ozlem, Gursoy, Attila

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 3.11 MB

english, 2017

11

EZH2 promotes neoplastic transformation through VAV interaction-dependent extranuclear mechanisms

Venkatesan, N, Wong, J F, Tan, K P, Chung, H H, Yau, Y H, Cukuroglu, E, Allahverdi, A, Nordenskiöld, L, Göke, J, Geifman-Shochat, S, Lin, V C L, Madhusudhan, M S, Su, I-h

Journal:

Year:

2017

Language:

english

File:

PDF, 4.98 MB

english, 2017

12

SRSF3 maintains transcriptome integrity in oocytes by regulation of alternative splicing and transposable elements

Do, Dang Vinh, Strauss, Bernhard, Cukuroglu, Engin, Macaulay, Iain, Wee, Keng Boon, Hu, Tim Xiaoming, Igor, Ruiz De Los Mozos, Lee, Caroline, Harrison, Andrew, Butler, Richard, Dietmann, Sabine, Jerne

Journal:

Year:

2018

Language:

english

File:

PDF, 2.74 MB

english, 2018

13

An ontology-based method for assessing batch effect adjustment approaches in heterogeneous datasets

Schmidt, Florian, List, Markus, Cukuroglu, Engin, Köhler, Sebastian, Göke, Jonathan, Schulz, Marcel H

Journal:

Year:

2018

Language:

english

File:

PDF, 595 KB

english, 2018

14

Tumor-associated B cells and humoral immune response in head and neck squamous cell carcinoma

Lechner, Axel, Schlößer, Hans A., Thelen, Martin, Wennhold, Kerstin, Rothschild, Sacha I., Gilles, Ramona, Quaas, Alexander, Siefer, Oliver G., Huebbers, Christian U., Cukuroglu, Engin, Göke, Jonathan

Journal:

Year:

2019

File:

PDF, 2.68 MB

2019

15

A Chemically Defined Feeder-free System for the Establishment and Maintenance of the Human Naive Pluripotent State

Szczerbinska, Iwona, Gonzales, Kevin Andrew Uy, Cukuroglu, Engin, Ramli, Muhammad Nadzim Bin, Lee, Bertha Pei Ge, Tan, Cheng Peow, Wong, Cheng Kit, Rancati, Giulia Irene, Liang, Hongqing, Göke, Jonath

Journal:

Stem Cell Reports

Year:

2019

Language:

english

File:

PDF, 4.94 MB

english, 2019

16

A Chemically Defined Feeder-free System for the Establishment and Maintenance of the Human Naive Pluripotent State

Szczerbinska, Iwona, Gonzales, Kevin Andrew Uy, Cukuroglu, Engin, Ramli, Muhammad Nadzim Bin, Lee, Bertha Pei Ge, Tan, Cheng Peow, Wong, Cheng Kit, Rancati, Giulia Irene, Liang, Hongqing, Göke, Jonath

Journal:

Stem Cell Reports

Year:

2019

File:

PDF, 4.94 MB

2019